FastQCFastQC Report
Sun 21 May 2023
EGAF00007943654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459972
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44440.9661457653944152No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27380.5952536241336429No Hit
ATGTCCAACATGGACATCGATGGTATTAACA10970.23849277782125872No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10130.2202307966571878No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9200.2000121746541094No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7570.16457523501430524No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA6430.13979111772020905No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6420.13957371318254153No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6410.13935630864487403No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6200.13479081335385631No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5850.12718165453549346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5670.12326837285747828No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5460.11870287756646056No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5380.11696364126512049No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5030.10935448244675763No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4990.1084848642960876No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4920.10696303253241503No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4660.10131051455305976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)