FastQCFastQC Report
Sun 21 May 2023
EGAF00007943655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485881
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA36440.749977875241057No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA33660.6927622195558172No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17980.3700494565541768No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17260.35523101335512197No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15520.31941977562407253No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT14510.29863279280317606No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11760.24203457225123026No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11690.24059389027354436No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11600.23874158487366248No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10650.2191894723193539No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10510.21630810836398215No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10030.20642914623127886No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9880.20334197056480907No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9580.1971676192318695No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9370.19284557329881186No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9310.19161070303222394No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9020.18564216341038237No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8740.1798794354996388No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8710.17926200036634485No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8610.177203883255365No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8140.16753073283375972No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7880.1621796283452121No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7760.15970988781203627No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7600.15641690043446851No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7250.14921349054603905No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG7220.1485960554127451No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7150.14715537343505922No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6980.14365657434639345No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6770.13933452841333577No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6760.13912871670223778No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6760.13912871670223778No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6650.13686478788015996No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6430.1323369302360043No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6390.13151368339161235No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6350.13069043654722043No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6340.13048462483612244No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6310.12986718970282848No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6260.12883813114733855No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6240.12842650772514258No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6140.12636839061416272No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5430.11175575912620579No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5410.11134413570400983No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5380.11072670057071587No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5380.11072670057071587No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5350.11010926543742192No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5320.10949183030412796No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5240.1078453366153441No Hit
GACGTCATCATCTTCGTCTTCTTCGTCATCGGTACCAGTCGGTT5120.10537559608216826No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5080.10455234923777634No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA5070.10434653752667836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)