FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448399
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33660.7506707196046378No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31070.6929096630456357No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16700.3724361561912493No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15930.3552639501872216No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13880.30954573939727786No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT13180.29393464302998No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11020.24576325995374657No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10980.2448711973041867No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10490.23394342984707817No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10200.22747597563776903No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9890.22056249010367995No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9690.2161021768558806No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9650.21521011420632072No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8930.19915298651424287No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8780.19580775157839336No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8650.19290854796732373No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8420.18777918773235444No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7990.17818951424958573No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7900.176182373288076No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7350.1639165118566277No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7290.16257841788228788No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7240.16146333957033804No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6920.154326838373859No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6910.15410382271146902No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG6600.14719033717737998No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6570.14652129019021007No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6550.1460752588654301No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6450.14384510224153044No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6430.1433990709167505No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6340.14139192995524077No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6130.1367086010450514No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6080.13559352273310155No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5950.13269431912203195No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5880.13113320948530216No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5840.13024114683574228No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5790.12912606852379244No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5580.12444273961360307No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5530.12332766130165322No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5520.12310464563926324No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5480.12221258298970336No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5460.12176655166492342No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5360.11953639504102373No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5320.11864433239146385No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5170.1152990974556143No Hit
GACGTCATCATCTTCGTCTTCTTCGTCATCGGTACCAGTCGGTT5110.11396100348127448No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4990.11128481553259485No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4970.11083878420781491No Hit
ATCGCCGGTCGGGGTGCCGGTGGTCGGCTTCACCTGGACCAGCA4790.10682450228479547No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4550.10147212638743619No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4490.10013403241309637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)