FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448399
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT77611.7308245558085542No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62601.39607804656121No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23440.5227487126420889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15760.35147268392659214No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13930.3106608177092277No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC13650.30441637916230857No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12330.27497831172683257No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11740.2618203876458244No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11650.25981324668431466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11540.257360074398025No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11380.2537918237997855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11370.25356880813739546No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10660.23773469610770762No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10550.23528152382141795No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10540.235058508159028No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9820.21900138046695017No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9350.2085196443346216No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8960.1998220335014128No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8830.19692282989034318No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8590.19157045399298392No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8210.1830958588221651No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7920.17662840461285598No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7570.16882285642920702No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7490.16703873113008727No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7260.16190937089511798No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7120.15878715162165838No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7110.15856413595926844No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6990.15588794801058878No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6840.15254271307473924No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6640.14808239982693983No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6630.14785938416454988No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6610.14741335283976995No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6570.14652129019021007No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6450.14384510224153044No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6420.1431760552543605No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6080.13559352273310155No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6060.1351474914083216No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6060.1351474914083216No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5750.12823400587423256No Hit
CTGGCATACCGTTCTCTGACCCGCAAAAAAC5660.12622686491272284No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5330.11886734805385381No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5310.1184213167290739No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5240.11686020709234408No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5080.11329195649410458No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5050.11262290950693468No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG4990.11128481553259485No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4950.11039275288303498No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4910.10950069023347508No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA4870.10860862758391521No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4810.1072705336095754No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4730.10548640831045564No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4600.10258720469938604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4560.10169514204982616No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4530.10102609506265625No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4530.10102609506265625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)