FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497791
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21610.43411793302811824No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16660.33467861009941924No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14090.28305051718492297No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13630.27380969121579135No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12900.2591449021778216No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12150.2440783380977157No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11940.23985970015528604No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10970.2203736106116824No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10920.219369173006342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9100.18280764417195167No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8820.17718279358204547No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8460.16995084282359466No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8140.1635224421494161No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7820.1570940414752376No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6220.12495203810434499No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5980.1201307375987111No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5790.11631387469841761No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5700.11450588700880489No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5700.11450588700880489No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT5380.10807748633462638No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5240.10526506103967327No Hit

[OK]Adapter Content

Adapter graph