FastQCFastQC Report
Wed 31 May 2023
EGAF00007943662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520300
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52791.014606957524505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19220.3694022679223525No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12850.24697290024985585No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10000.19219680953296175No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9230.1773976551989237No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6900.1326157985777436No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6450.12396694214876033No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6260.12031520276763405No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6090.11704785700557371No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC5860.11262733038631559No Hit
ATGGAATCTTCTGCCAAACGTAAAATGGATC5600.10763021333845858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5420.10417067076686527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)