FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527399
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16270.30849508626296224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8820.1672358119753735No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8360.15851376282473043No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7660.1452410793346214No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6800.12893463961820179No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6540.124004785750447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)