FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479913
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7790.16232108736375134No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7130.1485685947244605No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7010.14606814151731667No Hit
GGAATGACGCAGGATCGCGCAGCCTACGGTGTCGGTGCGATCCT5550.11564596083040052No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5240.1091864567119457No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4930.1027269525934909No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4920.10251858149289558No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4830.10064324158753774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)