FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479913
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47590.99163806773311No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11320.23587608587389797No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8990.1873256194351893No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8220.17128104468934993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7120.14836022362386517No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6820.14210909060600568No Hit
ATCAAAAAGCTGATTCGCGCCTGGTTCAAAG6000.12502266035718973No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5670.11814641403754429No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5430.1131455076232567No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5190.10814460120896913No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG4950.10314369479468154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)