FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496417
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32930.6633535918391191No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21340.42988052383379294No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14460.2912873652594492No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14000.28202096221523437No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12290.2475741161160879No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11080.22319944723891405No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9860.19862333481730077No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9300.1873424963286914No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9140.18411939961766016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8250.16619092416254883No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7990.16095339200712303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7670.15450719858506054No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7460.15027688415183205No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6300.12690943299685545No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.12509644109690038No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5880.11844880413039843No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5780.1164343686860039No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5290.10656363500847071No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5040.10152754639748438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)