FastQCFastQC Report
Sun 21 May 2023
EGAF00007943674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491570
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37060.7539109384217914No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11050.22478995870374516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10360.21075330064894116No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9280.18878287934576968No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8580.17454279146408444No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7940.16152328254368656No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6710.1365014138372968No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.13406025591472223No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6480.1318225278190288No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6330.12877108041581056No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5490.1116829749577883No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5440.11066582582338223No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5340.10863152755457005No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5170.10517322049758936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)