FastQCFastQC Report
Sun 21 May 2023
EGAF00007943676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494754
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37930.7666436249125828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12630.25527838077104986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10020.20252489115803007No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9400.18999341086681462No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7840.15846258948891773No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7750.15664350364019292No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6790.13723992125379483No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6210.12551692356201263No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5950.1202617866656965No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.11581513236881358No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5630.11379392587023045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5620.11359180522037214No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5550.11217696067136396No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5390.10894303027363093No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5130.1036878933773148No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4990.10085820427929841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)