FastQCFastQC Report
Wed 31 May 2023
EGAF00007943677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516979
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29800.576425734894454No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26090.5046626652146412No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10740.2077453823075986No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10300.19923439830244555No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9760.18878909975066685No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8090.15648604682201792No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7600.14700790554355206No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6910.13366113517183484No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6890.1332742722625097No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6770.13095309480655887No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6280.12147495352809302No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5880.11373769534159027No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT5780.11180338079496459No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5680.10986906624833892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)