FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516979
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64341.2445379792989657No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52911.02344582661965No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11020.21316146303815048No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10440.20194243866772152No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10130.1959460635731819No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8310.1607415388245944No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8310.1607415388245944No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8070.15609918391269278No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6980.1350151553544728No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6940.13424142953582255No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC6650.12863191735060805No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6370.12321583662005613No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6170.11934720752680475No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5830.11277053806827743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)