FastQCFastQC Report
Sun 21 May 2023
EGAF00007943681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489364
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26710.5458104805420914No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23630.4828716456461856No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19490.3982720428964942No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17850.3647591567830899No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16840.3441201232620299No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15660.3200071930097024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14190.2899682036275656No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12180.24889448345199075No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11960.24439885238799747No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11920.2435814649218169No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC9910.20250774474624206No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9550.1951512575506167No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9350.19106432021971376No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9160.18718172975535594No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8420.17206006163101495No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8370.17103832729828922No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8170.16695138996738623No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC8130.16613400250120566No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7740.15816447470594486No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7590.15509927170776763No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC7080.14467758151396506No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6960.14222541911542327No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6890.14079499104960724No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6790.13875152238415578No Hit
CGCCGCACGCAGGCTTTCGGCGTCTGGAACGCCGGCAGATGCCT6710.13711674745179459No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6630.1354819725194334No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6620.13527762565288823No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6010.12281246679363418No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5510.11259512346637676No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5500.11239077659983161No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5100.10421690193802569No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4970.10156039267293876No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4940.10094735207330331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)