FastQCFastQC Report
Wed 8 May 2024
EGAF00007943684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468139
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47751.019996197710509No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24120.5152315871995283No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17270.36890752532901555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12110.2586838524455343No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10450.22322429876596483No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10080.2153206633072656No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9850.2104075926167228No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9820.2097667573092607No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9010.19246420400778402No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8630.18434695677993074No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7640.16319939163368147No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7480.15978160332721691No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7310.15615020325159837No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7060.15080990902274752No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6610.14119737941081603No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6060.1294487321073442No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6020.12859428503072806No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5720.12218593195610705No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5560.11876814364964253No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5070.1083011669610949No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5020.10723310811532473No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4950.10573782573124649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)