FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460142
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21150.45964071960394837No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC18440.40074585671379703No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15820.34380691177940725No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14230.30925236122762106No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13270.28838923636616526No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9190.19972095570497803No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8570.1862468542319545No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7410.16103724502436204No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6750.1466938466821112No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6440.1399567959455994No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5920.12865593664564418No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC4900.10648886648034737No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4820.10475027274189272No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4660.10127308526498341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)