FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460142
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA44500.9670927670153996No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19540.42465152061754846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16970.36879919676969286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15990.3475014234736234No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14300.3107736307487689No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11180.24296847494903748No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7630.16581837780511235No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7530.16364513563204403No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6660.1447379287263497No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6060.13169847568793983No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5470.11887634686683676No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATC5010.10887943287072252No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4860.10561956961112004No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4850.10540224539381321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)