FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390659
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39571.0129038368500405No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34110.8731400018942351No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG13930.35657696354109336No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11620.29744611029056034No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7640.19556697785024793No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6750.17278496079701222No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6680.1709931167591173No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6330.1620338965696426No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5950.15230674322107002No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5120.13106059248603003No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4830.12363723861475097No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4230.10827857543279434No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4220.10802259771309505No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4200.1075106422736965No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4090.10469488735700444No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4070.10418293191760589No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)