FastQCFastQC Report
Sun 21 May 2023
EGAF00007943698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433414
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44591.0288084833438698No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12200.281486061825414No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12130.2798709778641207No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11510.26556594849266524No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9470.21849778733497305No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8750.20188549516166993No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8540.19704024327778982No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7010.1617391224095207No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5920.13658995786938125No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5780.1333597899467945No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5160.11905476057533905No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4860.11213297216979609No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4720.10890280424720937No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4720.10890280424720937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)