FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400879
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40821.0182623684453413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28140.7019574485069061No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13120.32728080044103086No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12090.30158726199177305No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7610.18983284232898207No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7150.17835805816717762No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6490.16189423741328432No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6430.16039752643565763No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5870.14642822397780877No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5110.127469884927871No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4980.12422701114301322No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4960.12372810748380433No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4880.1217324928469688No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4730.11799071540290212No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4520.11275222698120879No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4460.11125551600358213No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4310.10751373855951546No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4060.10127744281940435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)