FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406230
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21130.5201486842429165No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12060.2968761539029614No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11060.27225955739359475No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10090.24838145877950918No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9370.23065750929276516No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9170.22573418999089187No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7880.19397878049380893No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7560.18610146961081162No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7360.18117815030893827No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7240.1782241587278143No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6930.17059301380991065No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6090.1499150727420427No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5690.14006843413829603No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5670.1395761022081087No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5480.13489894887132903No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5440.1339142850109544No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5330.13120645939492406No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5170.1272678039534254No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4920.12111365482608373No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4910.12086748886099008No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4540.11175934815252442No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4480.11028235236196243No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4420.10880535657140043No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4200.10338970533933978No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4090.10068187972330944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)