FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406230
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21760.5356571400438176No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21390.5265489993353519No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12740.3136154395293307No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11220.27619821283509344No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10690.2631514166851291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10500.25847426334834944No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9440.23238067104842086No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9230.22721118578145383No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.22474952613051719No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8280.20382541909755558No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7990.19668660610983926No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7910.19471727838908992No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7900.19447111242399626No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7780.19151712084287226No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6830.16813135415897398No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.14745341309110602No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5920.14573025133545037No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5860.14425325554488835No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5610.13809910641754672No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5330.13120645939492406No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4450.10954385446668143No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4380.10782069271102576No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4310.10609753095537011No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4260.10486670112990178No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4190.10314353937424611No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4150.10215887551387146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)