FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943844

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943844
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521658
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10840.2077989794079646No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10170.19495531555156828No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9590.18383691997438936No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7220.13840485528833069No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7160.13725467643551906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7080.13572110463177023No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5530.10600815093413693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)