FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469851
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51841.1033285020144685No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44220.9411494282229899No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14710.3130779757838123No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9290.19772225663029344No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8640.18388808366907808No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7860.16728707611561963No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7200.1532400697242317No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7050.15004756827164356No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6950.14791923396991813No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5160.10982204996903273No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4930.10492688107506423No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4770.10152154619230352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)