FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474065
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44800.9450180882368452No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43710.9220254606435826No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8880.1873160853469461No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7640.16115933469039054No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7320.15440920548869883No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7320.15440920548869883No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5950.125510214843956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)