FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447213
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39430.8816827775578975No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34750.7770346568637316No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22370.5002090726342928No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21610.4832149333762659No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16490.3687281004800844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16200.36224349471057415No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12460.2786144409934416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11240.2513343753423984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10660.23836516380337783No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10530.23545827156187318No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9270.20728377752882854No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9230.20638934914682713No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7940.17754403382728143No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7760.17351910610827503No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7150.15987907328275341No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6370.14243771983372575No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5970.1334934360137116No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT5900.13192818634520911No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5880.1314809721542084No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5600.12521997348019848No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5580.12477275928919776No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC5530.123654723811696No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5360.11985340318818997No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5250.11739372513768606No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4710.10531894198066694No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4700.10509533488516658No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)