FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943852

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943852
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505510
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45270.8955312456726869No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31950.632034974580127No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30540.6041423512887975No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23560.466063974995549No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG20850.4124547486696603No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20650.40849834820280506No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18810.37209946390773674No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12510.2474728492017962No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11560.22867994698423372No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11150.2205693260271805No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11130.22017368598049497No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11040.2183933057704101No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11040.2183933057704101No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10910.21582164546695418No Hit
TCCTACACCAACGGCAAACTGACTATCACCC10290.20355680401970286No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9860.19505054301596408No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9690.1916876026191371No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9440.18674210203556804No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9120.18041186128859962No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8990.17784020098514372No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG8740.17289470040157465No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8250.1632015192577793No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8200.16221241914106546No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7990.15805819865086745No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7680.1519257779272418No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7570.1497497576704714No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7550.1493541176237859No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7450.14737591739035827No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG7100.14045221657336154No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6940.13728709619987736No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6840.13530889596644974No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6480.12818737512611025No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6280.12423097465925502No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5920.11710945381891555No Hit
CTGTCCCGTTGCACCCTGAACCGCAACGCAC5900.11671381377223002No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5630.11137267314197544No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5470.10820755276849123No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5160.10207513204486557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)