FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471196
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46140.9792103498331906No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40810.8660939396769072No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT32120.681669623681016No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27140.5759811203830253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17370.3686364060815457No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10220.21689488026214146No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9390.19928012971247633No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC8330.17678418322736186No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7820.1659606618052785No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7600.16129169178006603No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6380.1354001307311607No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5820.12351547975789268No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5770.12245435020670804No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5110.10844744013107073No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5100.10823521422083379No Hit
GCTGAACTGGATCGTCAGTACGAGGTCAAAC4850.10292956646491057No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4850.10292956646491057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)