FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466952
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45480.9739759118710275No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29750.6371104524662063No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21980.47071219311620893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21700.46471585944593874No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13630.2918929568777947No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12320.26383868149188777No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11240.24070996590656002No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5700.12206822114478576No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5690.12185406637084754No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5370.11500111360482447No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5350.11457280405694804No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT5270.11285956586544227No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG4890.10472168445578987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)