FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515247
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24570.47685867166621054No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24440.4743356099113629No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20220.39243314371553834No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA18170.35264640065832503No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14370.27889536474739296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14330.2781190380535937No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12030.23348025316013485No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11670.2264933129159413No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11020.21387800414170288No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9790.1900059583073749No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG9420.18282493638973152No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9170.177972894553486No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9050.17564391447208813No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7420.14400860169976729No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7000.1358571714148748No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6890.13372227300692677No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6820.13236370129277802No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6790.13178145627242857No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6150.11936022917164002No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6060.11761349411059162No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6020.11683716741679234No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6010.1166430857433425No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5930.11509043235574394No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG5710.11082063553984788No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5630.10926798215224931No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5540.10752124709120091No Hit
GCAACCGTCGTCTTTACGCGGACGGGACCATGCAGTCATCAGGC5380.10441594031600376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)