FastQCFastQC Report
Wed 31 May 2023
EGAF00007943864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466015
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44000.9441756166646995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26910.5774492237374333No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25200.5407551259079644No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16230.3482720513288199No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15960.3424782464083774No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13500.2896902460221238No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12430.26672961170777765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12130.2602920506850638No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11910.2555711726017403No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11400.24462731886312675No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11100.23818975784041285No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10640.2283188309389183No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9650.20707487956396253No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9400.20171024537836765No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9200.19741853802989176No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9050.1941997575185348No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8790.18862053796551612No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8270.17746209885947878No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8140.17467248908296942No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7570.1624411231398131No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7310.15686190358679442No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7080.15192644013604714No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6810.14613263521560466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6560.14076800103000978No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6370.13669087904895766No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6360.13647629368153386No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6060.13003873265882No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6040.1296095619239724No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5350.11480317157173052No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5180.11115522032552601No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5080.10900936665128806No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5020.10772185444674527No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4910.10536141540508352No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4720.10128429342403142No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4710.10106970805660763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)