FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495365
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29510.5957223461487994No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27420.553531234544225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16930.3417681911317917No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16350.3300596529831538No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14070.28403298577816355No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13570.27393941840864816No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13460.27171883358735477No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12490.25213731289049485No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12120.2446680730370535No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11720.23659321914144116No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11360.22932585063539004No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10870.219434154613265No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9860.19904514852684385No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9820.1982376631372826No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9800.19783392044250198No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9540.19258526541035398No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9400.18975906654688965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8880.17926175648259365No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8780.17724304300869054No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8440.17037941719742009No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8140.16432327677571085No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7930.16008397848051437No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7170.14474175607885095No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7060.14252117125755756No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6930.13989684374148353No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6790.13707064487801923No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6500.1312163758037003No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6420.12960140502457784No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6250.1261695921189426No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6210.12536210672938136No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5710.11526853935986596No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5570.11244234049640163No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5180.10456935794817962No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5010.10113754504254438No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)