FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943867

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943867
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439404
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23940.5448289046071497No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20290.4617618410392259No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT18730.42625920565129133No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18370.4180662897925372No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13220.3008620768131378No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13150.2992690098406023No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9710.220981147190285No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9570.21779501324521397No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8380.19071287471211004No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA8320.18934738873565102No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8250.18775432176311552No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7970.18138205387297338No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7670.17455462399067828No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7360.16749961311230666No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6710.15270684836733395No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6680.1520241053791044No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6660.1515689433869514No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6350.1445139325085798No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5670.12903842477537755No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5620.12790051979499503No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5480.12471438584992399No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5200.11834211795978189No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5200.11834211795978189No Hit
GTAGTTACCCGGCAGGCATTCGAAACGCAGGGTCGGGCTAGACT4790.10901129712064524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)