FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439404
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42150.9592538984624628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41580.9462817816861022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23340.5311740448425595No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19080.4342245405139689No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18820.4283074346159798No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16910.3848394643653676No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13590.3092825736679684No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10170.23144987300980419No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8800.20027127654732318No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8480.19298868467287508No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8250.18775432176311552No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8110.18456818781804443No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA8040.18297512084550893No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7920.18024414889259088No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7740.1761476909632138No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7550.17182365203776026No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7220.16431347916723563No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6830.155437820320252No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6760.15384475334771644No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6330.1440587705164268No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6260.14246570354389126No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5640.12835568178714807No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5520.12562470983423002No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5150.11720421297939938No Hit
TGTCCGCAGCCGCGCGGCGTATCCGTTCGTA4780.10878371612456873No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4730.10764581114418623No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)