FastQCFastQC Report
Wed 31 May 2023
EGAF00007943871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430709
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG22840.530288431400319No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT22440.5210014185912066No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10540.2447127875201122No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9380.21778045037368618No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8670.20129600263751163No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7640.17738194465404716No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7090.16461230204151758No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6780.15741486711445546No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC6320.14673480238397618No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5140.11933811459709455No Hit
CCAGTTAATACCATCGTGACAAGCAGACGCGGACCAGGCTACGC4960.11515895883299396No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4880.11330155627117149No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4360.10122843961932533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)