FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430709
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGCGGTAATGTTAGCGTTGGTTATAACC23590.5477015804174048No Hit
ATGTCCAACATGGACATCGATGGTATTAACA23240.5395754442094314No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11130.258411131413553No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9720.22567441126143173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8840.20524298308138442No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8680.20152817795773947No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8390.19479509367113296No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7910.18365067830019804No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7470.17343496421017437No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6790.15764704243468328No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA6510.15114613346830458No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC5650.1311790559287129No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5600.13001817932757384No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG5320.12351727036119516No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5110.11864158863641114No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4720.10958675114752653No Hit
ATCCACGTTCAGTGCAACTCTTCCAAATTCC4660.10819369922615966No Hit
GGTGCCCTGCTGAACGACAAACACTCCAACG4410.10238931622046439No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4380.10169279025978095No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)