FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416735
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56051.3449794233745667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19120.4588047560200127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18190.4364884158997924No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18160.43576853396043047No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG16670.40001439763878727No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15580.37385868717530324No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14280.34266380313628564No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12240.2937118312596734No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11980.2874728544518699No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11210.2689958846749133No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10930.26227698657420184No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10900.2615571046348399No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10050.24116044968625147No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9580.22988229930291432No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9160.2198039521518471No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8970.21524469986922146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8860.21260513275822762No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8160.19580788750644895No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8080.1938882023348171No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7700.18476969776956578No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7410.17781083902240033No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6920.16605276734615523No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6860.16461300346743132No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6810.16341320023516143No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6420.15405473502345615No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6400.15357481373054818No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6080.14589607304402077No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6070.1456561123975668No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC6040.14493623045820486No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5790.1389372142968553No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5630.13509784395359162No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG5320.1276590639135182No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4740.11374134641918725No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4620.11086181866173947No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG4460.10702244831847577No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4450.1067824876720218No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4350.10438288120748199No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4250.10198327474294215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)