FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381555
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57031.4946731139678422No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT50101.3130479223178833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16940.44397269069989914No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16570.4342755303953559No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14320.3753063123271874No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG14170.37137503112264286No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12500.32760676704538005No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11300.2961565174090236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11290.2958944319953873No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11260.2951081757544784No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9910.25972664491357733No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9490.24871905754085258No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8880.23273184730903804No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8440.22120008910904063No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8250.21622046624995084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8170.2141237829408604No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7950.20835790384086172No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7090.1858185582681396No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7080.18555647285450327No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6870.1800526791681409No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6640.1740247146545059No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6490.17009343344996133No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6400.1677346647272346No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6380.167210493899962No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5700.14938868577269332No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5540.14519531915451245No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5510.14440906291360356No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5310.13916735464087746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5080.13313939012724246No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5060.13261521929996986No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4810.12606308395906224No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4600.12055929027269988No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG4450.11662800906815532No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG3860.10116496966361337No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3830.10037871342270445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)