FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425880
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58831.381375035221189No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19800.46491969568892644No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18940.4447262139569832No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG17120.40199117122194045No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC16600.3897811590119283No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14940.35080304311073546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13150.30877242415703954No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12990.3050154973231896No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12590.2956231802385649No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC12150.2852916314454776No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11660.27378604301681225No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11260.26439372593218746No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10570.24819197896120976No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9950.23363388748004135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9760.22917253686484457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9560.22447637832253217No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9340.21931060392598856No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC8520.20005635390250776No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT8210.19277730816192354No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8130.19089884474499857No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7920.18596787827557057No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7300.17140978679440216No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7260.17047055508593972No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6980.16389593312670236No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6750.1584953508030431No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6360.14933784164553396No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5990.14064994834225603No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5870.1378322532168686No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5870.1378322532168686No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC5730.13454494223724991No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5360.125857048933972No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5190.12186531417300649No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4940.115995115995116No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG4940.115995115995116No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG4640.1089508781816474No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4440.10425471963933501No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4270.10026298487836949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)