FastQCFastQC Report
Sun 21 May 2023
EGAF00007943879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357009
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT31570.8842914324288744No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15720.4403250338226768No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13080.36637731821886843No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12920.3618956384853043No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12140.3400474497841791No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG10270.2876678178981482No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10010.2803850883311065No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8960.25097406507959186No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG8240.23080650627855323No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7390.2069975826939937No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7260.20335621791047284No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6130.1717043547921761No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5850.16386141525843886No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT5820.1630211003083956No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA5730.16050015545826576No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5260.1473352212409211No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4860.13613102190701074No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4740.13276976210683766No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4600.128848292339969No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT4130.11568335812262437No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT4110.11512314815592885No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4070.1140027282225378No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT4040.11316241327249453No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT3990.11176188835575573No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT3990.11176188835575573No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT3980.11148178337240797No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT3970.11120167838906021No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC3770.10559957872210504No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA3700.10363884383867074No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG3670.10279852888862746No Hit
TGCCAGTTCTTTACGACAACCGCCGTCGTGACGTTTGTCCACGG3600.10083779400519315No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC3580.10027758403849762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)