FastQCFastQC Report
Wed 31 May 2023
EGAF00007943880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357009
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33190.9296684397312114No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31690.8876526922290474No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16660.46665490225736606No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13090.3666574232022162No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12520.35069143915139395No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA10810.3027934869989272No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10150.2843065580979751No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9880.27674372354758564No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC8420.23584839597881285No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7400.20727768767734148No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7000.19607348834343113No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6610.18514939399286853No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT6220.17422529964230593No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC6100.17086403984213283No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5970.16722267505861196No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5800.16246089034170008No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5550.15545826575800611No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5180.14509438137413905No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5000.14005249167387937No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4970.1392121767238361No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT4750.1330498670901854No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4690.13136923719009885No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4420.12380640263970936No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA4410.1235262976563616No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4350.12184566775627506No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG4310.12072524782288402No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4170.11680377805601538No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4090.11456293818923333No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC4050.11344251825584228No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4030.11288230828914678No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG3860.10812052357223488No Hit
GAAGACGGTAAGGTTATGGTCCTGTGCAACC3750.10503936875540952No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG3690.10335873885532298No Hit
TCCTACACCAACGGCAAACTGACTATCACCC3590.10055768902184539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)