FastQCFastQC Report
Wed 31 May 2023
EGAF00007943881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384900
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC30890.8025461158742531No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT28040.728500909327098No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25980.6749805144193297No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23070.5993764614185503No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22070.5733956871914783No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17910.46531566640685895No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13110.34060795011691347No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11430.2969602494154326No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10100.26240581969342686No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9520.2473369706417251No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9450.24551831644583008No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8930.23200831384775264No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7890.2049883086515978No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC7570.1966744608989348No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT6570.1706936866718628No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5940.1543257989088075No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT5860.15224733697064172No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5780.15016887503247597No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5430.14107560405300076No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5340.1387373343725643No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5310.13795791114575215No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5070.13172252533125486No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5040.1309431021044427No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5000.12990387113535984No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4980.12938425565081837No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4780.124188100805404No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4390.11405559885684594No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4290.11145752143413873No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4270.11093790594959729No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4260.11067809820732658No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4240.11015848272278514No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4160.10808002078461938No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4080.10600155884645363No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4070.10574175110418291No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT4050.10522213561964147No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG3960.10288386593920498No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC3940.10236425045466356No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA3910.1015848272278514No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA3890.10106521174330996No Hit
GGTGCTGTTGGCTTTGCCGCCGGTGGACGTCACGGTTGGTACTG3890.10106521174330996No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA3890.10106521174330996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)