FastQCFastQC Report
Sun 21 May 2023
EGAF00007943882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384900
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48391.2572096648480124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39291.0207846193816574No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA28120.7305793712652637No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT25040.6505585866458821No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT24960.6484801247077163No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23750.6170433878929592No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22010.5718368407378539No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14020.364250454663549No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12420.3226812159002338No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10780.28007274616783584No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9840.2556508183943882No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9830.25539101065211745No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9490.24655754741491295No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9460.2457781241881008No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8710.22629254351779682No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8240.214081579631073No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7180.18654195895037673No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6680.17355157183684075No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC6290.16341906988828267No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6180.16056118472330475No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6090.15822291504286828No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5680.14757079760976877No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5660.14705118212522733No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5600.145492335671603No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5530.14367368147570797No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5450.14159521953754223No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5390.14003637308391792No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5310.13795791114575215No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5250.13639906469212784No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5240.1361392569498571No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5000.12990387113535984No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4860.12626656274356976No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4470.11613406079501169No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4250.11041829046505587No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4170.10833982852689009No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4160.10808002078461938No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4090.10626136658872434No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG3990.10366328916601715No Hit
CAGGCAAGCGGTCCGGGTAACTCCTCCACCT3860.1002857885164978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)