FastQCFastQC Report
Wed 31 May 2023
EGAF00007943884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences372115
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26030.6995149348991575No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18870.5071012993295083No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17470.4694785214248283No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16490.44314257689155234No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14670.39423296561546833No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14100.37891512032570573No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14050.3775714496862529No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14040.3773027155583623No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13210.3549977829434449No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11690.3141501955040781No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11290.3034008303884552No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11130.29910108434220606No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11090.29802614783064374No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11070.29748867957486264No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10940.29399513591228515No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10570.28405197318033404No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9150.24589172701987289No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8790.23621729841581232No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG7920.2128374292893326No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7590.20396920306894376No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7310.19644464748800775No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7230.19429477446488316No Hit
GCCCGCCCGGAAACTCCATCCCCGGCAATCC6420.17252731010574687No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6230.16742136167582602No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6180.16607769103637315No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6100.16392781801324857No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6010.16150921086223344No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5910.15882186958332772No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5810.156134528304422No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5650.15183478225817287No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5500.14780377033981432No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5460.14672883382825203No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4940.1327546591779423No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4830.129798583771146No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4700.12630504010856858No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4680.12576757185278745No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4320.11609314324872687No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG4270.11474947260927401No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCA4160.11179339720247773No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC3960.1064187146446663No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG3920.10534377813310401No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT3830.10292517098208886No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG3810.10238770272630773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)