FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432432
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22370.5173067673067673No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22320.5161505161505162No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20400.4717504717504718No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19490.45070670070670066No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17210.397981647981648No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT14260.3297628297628298No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13170.30455655455655456No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12800.29600029600029604No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10780.24928774928774927No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9220.21321271321271323No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8920.2062752062752063No Hit
GCGAATGTGACGAGTCAGTTCATCAGAACGGGAGAAGCGACGGT8900.2058127058127058No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT8510.19679394679394682No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8460.19563769563769565No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8340.19286269286269286No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8270.19124394124394123No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8000.185000185000185No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7990.18476893476893477No Hit
ATGACGGGTCAGTTCGTCAGAACGGGAGAAACGACGATCGCAAC7080.1637251637251637No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG7080.1637251637251637No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6840.15817515817515818No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6140.141987641987642No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6060.14013764013764016No Hit
TCAGCATTTACCGAAGTGAGACAGGGTCAGGGTGCCGTTAGATT5970.13805638805638806No Hit
AGGGTAAACGTCCGGCATTTCGTTTGCCGGTTTTACACGTGGCT5750.13296888296888296No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5650.13065638065638066No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5610.12973137973137971No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5560.1285751285751286No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5520.12765012765012765No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5500.1271876271876272No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT5430.12556887556887558No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5110.11816886816886817No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5070.11724386724386725No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5030.11631886631886632No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4700.1086876086876087No Hit
GCATTTACCGAAGTGGGACAGGGTCAGAGTACCGTTGCTTTCCA4660.10776260776260776No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4550.10521885521885521No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4330.10013135013135013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)