FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences336532
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44681.327659776782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16950.5036668132599574No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC15510.4608774202750407No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10610.3152746247013657No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10400.3090345048910653No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA8320.24722760391285228No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6410.19047222849535855No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5940.17650624606278156No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5420.16105452081822827No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5370.15956877800625202No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5170.1536258067583469No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5100.15154576682158014No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4990.14827713263523232No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4980.14797998407283705No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4670.13876837863858416No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4570.13579689301463158No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4540.13490544732744583No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4510.13401400164026006No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4280.1271795847051692No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4020.11945372208289255No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC3860.11469934508456849No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG3810.1132136022725922No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG3810.1132136022725922No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3800.11291645371019694No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG3650.10845922527426813No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG3510.10429914540073454No Hit
GTCGTTGAAGGCAGCCCGGCGGCGGCAAACG3480.10340769971354878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)