FastQCFastQC Report
Sun 21 May 2023
EGAF00007943891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409758
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10330.25210002001181187No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7880.19230863094802297No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7250.17693370233162015No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7020.17132063315420323No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6260.15277310022012994No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6020.14691598455673838No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5620.13715412511775243No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5030.12275538244524817No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4790.11689826678185661No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC4140.10103524519350447No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4130.1007911987075298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)