FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409758
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62031.5138203525007443No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15570.37998037866252765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14500.3538674046632403No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10300.2513678805538879No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7280.17766584178954406No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6850.1671718428926342No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5790.14130291537932146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5020.12251133595927352No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4970.12129110352940028No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4880.11909468515562845No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4570.11152924409041434No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG4480.1093328257166425No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4330.10567212842702278No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4150.1012792916794791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)