FastQCFastQC Report
Wed 31 May 2023
EGAF00007943893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397436
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG14630.3681095824233336No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11840.2979096005394579No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10610.2669612214293622No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9730.24481929165953764No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9540.24003864773196187No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8360.21034833281333346No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC7960.200283819281595No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7620.19172898277961734No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7170.1804064050564116No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7120.1791483408649443No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6920.17411608409907506No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4630.11649674412987249No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4480.11272255155547056No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4300.10819352046618827No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4220.10618061775984058No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4150.10441932789178636No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4080.10265803802373212No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT3980.1001419096407975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)